Antigen

Antigen Class

TFs and others

Antigen

Pc

Cell type

Cell type Class

Embryo

Cell type

2-4h embryos

NA

NA

Sample

source_name

orer embryos

developmental stage

2-4 hr after egg deposition

genotype/variation

wild type

chip antibody

Pc (d-220) (Santa Cruz, catalog #sc-25762)

barcode kit

none

library kit

NEB-next-DNA

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

dm6

Number of total reads

31179457

Reads aligned (%)

73.4

Duplicates removed (%)

27.1

Number of peaks

3833 (qval < 1E-05)

dm3

Number of total reads

31179457

Reads aligned (%)

73.8

Duplicates removed (%)

24.8

Number of peaks

3103 (qval < 1E-05)